Ontology

Annotations

birn_annot:birnlexCuratorBill Bug
birn_annot:birnlexCuratorMaryann Martone
birn_annot:birnlexCuratorJessica Turner
birn_annot:birnlexCuratorDavid Kennedy
birn_annot:birnlexCuratorJeff Grethe
birn_annot:birnlexCuratorChristine Fennema-Notestine
birn_annot:birnlexCuratorCarol Bean
birn_annot:birnlexCuratorAmarnath Gupta
core:changeNoteDuplicated all SKOS core:prefLabel Annotations as rdfs:label Annotations using a parsing script supplied by Trish Whetzel (UPenn/OBI community). This makes it possible to use rdfs:label as the DISPLAY_SLOT in Protege to match OBI and to use it to generate OWLDocs where both BIRNLex and OBI classes will use the same AnnotationProperty for their preferred display name (BB: 2007-02-27).
core:definitionThe BIRN Project lexicon will provide entities for data and database annotation for the BIRN project, covering anatomy, disease, data collection, project management and experimental design. It is built using the organizational framework provided by the foundational Basic Formal Ontology (BFO). It uses an abstract biomedical layer on top of that - OBO-UBO which has been constructed as a proposal to the OBO Foundry. This is meant to support creating a sharable view of core biomedical objects such as biomaterial_entity, and organismal_entity that all biomedical ontologies are likely to need and want to use with the same intended meaning. The BIRNLex biomaterial entities have already been factored to separately maintained ontology - BIRNLexBiomaterialEntity.owl which this BIRNLex-Main.owl file imports. The Ontology of Biomedical Investigation (OBI) is also imported and forms the foundation for the formal description of all experiment-related artifacts. The BIRNLex will serve as the basis for construction of a formal ontology for the multiscale investigation of neurological disease.
core:editorialNoteThe current (2006-10-10) members of the BIRN Ontology Task Force are listed here as the primary curators of the main BIRNLex ontology. Others from within BIRN labs and directly collaborating with BIRN labs have also contributed to specific classes and class properties. Effort is made to provide attribution for each class, where appropriate.
dc:creatorThe BIRN Ontology Task Force
dc:subjectThe BIRN project lexicon
dc:titleBIRNLex-Main
obo_annot:createdDate"2006-07-28"^^http://www.w3.org/2001/XMLSchema#date
obo_annot:modifiedDate"2007-03-07"^^http://www.w3.org/2001/XMLSchema#date
protege:defaultLanguageen

Namespaces

Default Namespace

http://www.nbirn.net/birnlex/1.2/BIRNLex-Main.owl#
birn_obo_ubohttp://www.nbirn.net/birnlex/1.1/BIRNLex-OBO-UBO.owl#
birn_annothttp://www.nbirn.net/birnlex/1.1/BIRNLex_annotation_properties.owl#
snaphttp://www.ifomis.org/bfo/1.0/snap#
corehttp://www.w3.org/2004/02/skos/core#
xsdhttp://www.w3.org/2001/XMLSchema#
protege-dchttp://protege.stanford.edu/plugins/owl/dc/protege-dc.owl#
birn_org_anathttp://www.nbirn.net/birnlex/1.2/BIRNLex-OrganismalAnatomy.owl#
rdfshttp://www.w3.org/2000/01/rdf-schema#
foafhttp://xmlns.com/foaf/0.1/
owlhttp://www.w3.org/2002/07/owl#
dctermshttp://purl.org/dc/terms/
j.0http://protege.stanford.edu/plugins/owl/protege#
birn_cog_behavhttp://www.nbirn.net/birnlex/1.2/BIRNLex-CogBehavior.owl#
obo_annothttp://www.nbirn.net/birnlex/1.1/OBO_annotation_properties.owl#
birn_investhttp://www.nbirn.net/birnlex/1.2/BIRNLex-Investigation.owl#
rdfhttp://www.w3.org/1999/02/22-rdf-syntax-ns#
damlhttp://www.daml.org/2001/03/daml+oil#
obihttp://obi.sourceforge.net/ontology/OBI.owl#
rohttp://www.ifomis.org/obo/ro/1.0/light#
bfohttp://www.ifomis.org/bfo/1.0#
protegehttp://protege.stanford.edu/plugins/owl/protege#
dcmitypehttp://purl.org/dc/dcmitype/
xsphttp://www.owl-ontologies.com/2005/08/07/xsp.owl#
dchttp://purl.org/dc/elements/1.1/
spanhttp://www.ifomis.org/bfo/1.0/span#

Imports

http://www.nbirn.net/birnlex/1.2/BIRNLex-Investigation.owl
Generated with OWLDoc